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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1788
ChIP-seq
1459
total RNA-seq
455
ATAC-seq
257
single cell RNA-seq
212
DNase-seq
86
RNA microarray
78
snATAC-seq
75
WGBS
57
pCHi-C
31
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
257
Transcription
78
DNA accessibility
Target of assay
3
control
Date released
August, 2021
56
May, 2022
48
July, 2018
47
September, 2023
45
February, 2021
43
April, 2018
40
September, 2020
19
April, 2020
16
January, 2021
3
August, 2018
3
December, 2019
3
February, 2023
3
July, 2019
3
June, 2018
3
May, 2023
1
August, 2022
1
November, 2018
1
September, 2018
Available data
155
fastq
107
tsv
100
bam
100
bigWig
73
zippedFastqFolder
8
csv
6
txt
1
bed bed3+
Organism
334
Homo sapiens
Biosample type
243
primary cell
90
tissue
2
in vitro differentiated cells
Organ
85
pancreas
70
epithelium
56
kidney
19
lung
8
blood
8
bodily fluid
4
connective tissue
3
brain
2
musculature of body
1
heart
1
liver
Project
133
HPAP
118
AMP
47
KPMP
19
LungMap
18
T1D
Genome assembly (visualization)
101
hg19
100
GRCh38
Lab
133
Klaus Kaestner, Upenn
115
AMP-T2D consortium
47
KPMP
19
Xin Sun, UCSD
18
Kyle Gaulton, UCSD
3
Katalin Susztak, Upenn
Audit category:
36
audit script error
9
inconsistent ontology term
month_released!
August, 2021
BIOSAMPLE
ASSAY
335 results
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single cell RNA-seq
snATAC-seq
primary cell
Langerhans cell
85
48
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
+ See 15 more…
tissue
kidney
56
lung
9
10
islet of Langerhans
7
pancreas
4
skeletal muscle tissue
1
1
+ See 2 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
See all biosamples
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