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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
468
ChIP-seq
321
ATAC-seq
190
total RNA-seq
157
single cell RNA-seq
86
RNA microarray
78
snATAC-seq
58
WGBS
57
pCHi-C
26
Hi-C
21
RRBS
10
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
157
Transcription
78
DNA accessibility
Date released
August, 2021
56
May, 2022
47
September, 2023
45
February, 2021
40
September, 2020
19
April, 2020
16
January, 2021
3
December, 2019
3
February, 2023
3
May, 2023
1
August, 2022
1
November, 2018
1
September, 2018
Available data
161
fastq
113
tsv
106
bam
bigWig
73
zippedFastqFolder
8
csv
6
txt
1
bed bed3+
Organism
234
Homo sapiens
Biosample type
143
primary cell
90
tissue
2
in vitro differentiated cells
Organ
56
kidney
19
lung
11
pancreas
8
blood
8
bodily fluid
2
musculature of body
1
heart
1
liver
Project
133
HPAP
47
KPMP
19
LungMap
18
AMP
18
T1D
Genome assembly (visualization)
1
hg19
Lab
133
Klaus Kaestner, Upenn
47
KPMP
19
Xin Sun, UCSD
18
Kyle Gaulton, UCSD
15
AMP-T2D consortium
3
Katalin Susztak, Upenn
Audit category:
36
audit script error
2
inconsistent ontology term
month_released!
August, 2021
files.file_type!
bigWig
BIOSAMPLE
ASSAY
235 results
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single cell RNA-seq
snATAC-seq
primary cell
Langerhans cell
85
48
peripheral blood mononuclear cell
8
pancreatic cell
2
tissue
kidney
56
lung
9
10
islet of Langerhans
7
pancreas
4
skeletal muscle tissue
1
1
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in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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