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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
468
ChIP-seq
321
ATAC-seq
190
total RNA-seq
157
single cell RNA-seq
86
RNA microarray
78
snATAC-seq
58
WGBS
57
pCHi-C
26
Hi-C
21
RRBS
10
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
157
Transcription
Date released
August, 2021
47
September, 2023
40
September, 2020
34
May, 2022
18
February, 2021
9
April, 2020
3
December, 2019
3
May, 2023
1
February, 2023
1
November, 2018
1
September, 2018
Available data
128
fastq
107
tsv
100
bam
bigWig
52
zippedFastqFolder
8
csv
5
txt
Organism
157
Homo sapiens
Biosample type
87
primary cell
68
tissue
2
in vitro differentiated cells
Organ
56
kidney
9
lung
1
heart
1
liver
1
musculature of body
Project
85
HPAP
47
KPMP
16
AMP
9
LungMap
Lab
85
Klaus Kaestner, Upenn
47
KPMP
13
AMP-T2D consortium
9
Xin Sun, UCSD
3
Katalin Susztak, Upenn
Audit category:
7
audit script error
2
inconsistent ontology term
month_released!
August, 2021
files.file_type!
bigWig
BIOSAMPLE
ASSAY
157 results
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Clear Filters
single cell RNA-seq
primary cell
Langerhans cell
85
pancreatic cell
2
tissue
kidney
56
lung
9
heart
1
liver
1
skeletal muscle tissue
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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