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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1635
ChIP-seq
985
total RNA-seq
432
ATAC-seq
253
single cell RNA-seq
203
DNase-seq
86
RNA microarray
78
snATAC-seq
69
WGBS
52
pCHi-C
30
Hi-C
20
RRBS
15
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
253
Transcription
Target of assay
3
control
Date released
August, 2021
47
September, 2023
46
July, 2018
41
April, 2018
40
September, 2020
34
May, 2022
18
February, 2021
9
April, 2020
3
August, 2018
3
December, 2019
3
July, 2019
3
June, 2018
3
May, 2023
1
February, 2023
1
November, 2018
1
September, 2018
Available data
125
fastq
103
tsv
96
bam
96
bigWig
52
zippedFastqFolder
8
csv
5
txt
Organism
253
Homo sapiens
Biosample type
183
primary cell
68
tissue
2
in vitro differentiated cells
Organ
74
pancreas
70
epithelium
56
kidney
9
lung
connective tissue
3
brain
1
heart
1
liver
1
musculature of body
Project
112
AMP
85
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
96
GRCh38
96
hg19
Lab
109
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
9
Xin Sun, UCSD
3
Katalin Susztak, Upenn
Audit category:
9
inconsistent ontology term
7
audit script error
month_released!
August, 2021
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
253 results
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single cell RNA-seq
primary cell
Langerhans cell
85
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
+ See 13 more…
tissue
kidney
56
lung
9
heart
1
liver
1
skeletal muscle tissue
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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