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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1694
ChIP-seq
1381
total RNA-seq
408
ATAC-seq
215
single cell RNA-seq
182
DNase-seq
86
RNA microarray
78
snATAC-seq
67
WGBS
54
pCHi-C
28
Hi-C
19
RRBS
17
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
215
Transcription
Target of assay
3
control
Date released
49
April, 2018
48
July, 2018
September, 2023
40
September, 2020
34
May, 2022
18
February, 2021
August, 2021
9
April, 2020
3
August, 2018
3
December, 2019
3
July, 2019
3
June, 2018
3
May, 2023
1
November, 2018
1
September, 2018
Available data
134
fastq
113
tsv
106
bam
106
bigWig
52
zippedFastqFolder
8
csv
5
txt
Organism
215
Homo sapiens
Biosample type
187
primary cell
26
tissue
2
in vitro differentiated cells
Organ
80
pancreas
70
epithelium
9
kidney
9
lung
4
connective tissue
3
brain
heart
1
liver
1
musculature of body
Project
121
AMP
85
HPAP
9
LungMap
Genome assembly (visualization)
106
GRCh38
106
hg19
Lab
118
AMP-T2D consortium
85
Klaus Kaestner, Upenn
9
Xin Sun, UCSD
3
Katalin Susztak, Upenn
Audit category:
9
inconsistent ontology term
7
audit script error
month_released!
August, 2021
September, 2023
organ_slims!
heart
BIOSAMPLE
ASSAY
215 results
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single cell RNA-seq
primary cell
Langerhans cell
85
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
+ See 14 more…
tissue
kidney
9
lung
9
islet of Langerhans
6
liver
1
skeletal muscle tissue
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
See all biosamples
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