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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
526
ChIP-seq
270
ATAC-seq
260
single cell RNA-seq
248
total RNA-seq
85
RNA microarray
83
snATAC-seq
75
WGBS
53
pCHi-C
26
DNase-seq
10
MeRIP-seq
7
Hi-C
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
260
Transcription
Date released
106
August, 2021
47
September, 2023
40
September, 2020
34
May, 2022
18
February, 2021
9
April, 2020
December, 2019
3
May, 2023
1
February, 2023
1
November, 2018
1
September, 2018
Available data
103
tsv
52
zippedFastqFolder
36
fastq
13
txt
8
csv
Organism
260
Homo sapiens
Biosample type
173
tissue
87
primary cell
Organ
93
heart
63
kidney
9
lung
6
blood vessel
6
vasculature
2
artery
1
liver
1
musculature of body
Project
119
AMP
85
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
100
GRCh38
hg19
Lab
108
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
5
audit script error
month_released!
December, 2019
assembly!
hg19
BIOSAMPLE
ASSAY
260 results
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single cell RNA-seq
tissue
kidney
63
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 13 more…
primary cell
Langerhans cell
85
pancreatic cell
2
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