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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1614
ChIP-seq
1124
total RNA-seq
378
ATAC-seq
286
single cell RNA-seq
171
DNase-seq
87
RNA microarray
72
snATAC-seq
55
pCHi-C
23
WGBS
19
Hi-C
14
RRBS
14
small RNA-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
286
Transcription
Target of assay
3
control
Date released
106
August, 2021
47
September, 2023
40
September, 2020
33
May, 2022
18
February, 2021
11
July, 2018
10
April, 2018
9
April, 2020
3
December, 2019
3
July, 2019
3
May, 2023
June, 2018
1
February, 2023
1
November, 2018
1
September, 2018
Available data
129
tsv
57
fastq
52
zippedFastqFolder
24
bam
24
bigWig
13
txt
8
csv
Organism
286
Homo sapiens
Biosample type
173
tissue
111
primary cell
2
in vitro differentiated cells
Organ
93
heart
pancreas
69
epithelium
64
kidney
9
lung
6
blood vessel
6
vasculature
4
connective tissue
3
brain
2
artery
1
liver
musculature of body
Project
145
AMP
85
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
24
GRCh38
24
hg19
Lab
134
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
7
audit script error
3
inconsistent ontology term
month_released!
June, 2018
organ_slims!
musculature of body
pancreas
BIOSAMPLE
ASSAY
286 results
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single cell RNA-seq
tissue
kidney
64
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 12 more…
primary cell
Langerhans cell
85
pancreatic cell
8
mesenchymal cell
6
cerebellar granule cell
2
endothelial cell
2
+ See 5 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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