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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1380
ChIP-seq
1005
total RNA-seq
201
DNase-seq
113
ATAC-seq
84
RNA microarray
39
single cell RNA-seq
16
small RNA-seq
14
WGBS
3
FAIRE-seq
1
MPRA
1
pCHi-C
1
snATAC-seq
Assay category
39
Transcription
Target of assay
3
control
Date released
11
July, 2018
10
April, 2018
8
August, 2021
5
February, 2021
3
July, 2019
2
June, 2018
Available data
131
tsv
59
fastq
52
zippedFastqFolder
26
bam
26
bigWig
13
txt
8
csv
Organism
39
Homo sapiens
Biosample type
26
primary cell
13
tissue
Organ
pancreas
70
epithelium
13
kidney
4
connective tissue
3
brain
Project
39
AMP
Genome assembly (visualization)
26
GRCh38
26
hg19
Lab
31
AMP-T2D consortium
8
Katalin Susztak, Upenn
Audit category:
5
audit script error
2
inconsistent ontology term
organ_slims!
pancreas
BIOSAMPLE
ASSAY
39 results
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single cell RNA-seq
primary cell
pancreatic cell
7
mesenchymal cell
6
cerebellar granule cell
2
endothelial cell
2
enteroendocrine cell
2
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tissue
kidney
13
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