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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
403
total RNA-seq
218
ChIP-seq
152
ATAC-seq
74
single cell RNA-seq
51
WGBS
11
snATAC-seq
10
MeRIP-seq
9
Hi-C
8
DNase-seq
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
74
Transcription
8
DNA accessibility
Date released
37
July, 2018
33
April, 2018
4
June, 2019
3
August, 2018
2
November, 2018
1
August, 2017
1
June, 2018
1
October, 2019
Available data
82
bam
82
bigWig
74
tsv
72
fastq
8
bed narrowPeak
8
bigBed narrowPeak
7
bed bed3+
7
bed broadPeak
7
bigBed broadPeak
Organism
82
Homo sapiens
Biosample type
74
primary cell
7
tissue
1
cell line
Organ
145
kidney
123
heart
89
epithelium
82
pancreas
36
limb
35
brain
34
musculature of body
18
ureter
17
vasculature
15
blood vessel
13
connective tissue
9
lung
7
liver
6
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
82
AMP
Genome assembly (visualization)
82
GRCh38
80
hg19
Lab
82
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
BIOSAMPLE
ASSAY
82 results
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single cell RNA-seq
DNase-seq
primary cell
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
pancreatic ductal cell
10
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tissue
body of pancreas
4
pancreas
2
islet of Langerhans
1
cell line
Panc1
1
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