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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
403
total RNA-seq
218
ChIP-seq
152
ATAC-seq
74
single cell RNA-seq
51
WGBS
11
snATAC-seq
10
MeRIP-seq
9
Hi-C
8
DNase-seq
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
405
Transcription
Date released
120
July, 2018
89
August, 2017
42
February, 2023
41
May, 2021
26
February, 2021
26
September, 2018
20
November, 2019
16
September, 2020
6
April, 2018
6
May, 2022
5
March, 2020
4
July, 2019
2
October, 2018
1
August, 2021
1
February, 2020
Available data
338
bam
334
tsv
332
bigWig
184
fastq
6
txt
Organism
405
Homo sapiens
Biosample type
291
tissue
81
primary cell
33
cell line
Organ
477
connective tissue
405
pancreas
401
adipose tissue
192
liver
131
epithelium
73
heart
62
bone element
61
blood vessel
61
kidney
61
vasculature
56
artery
21
brain
19
eye
14
embryo
8
musculature of body
7
limb
5
nerve
4
skeleton
1
pericardium
1
spinal cord
Project
343
AMP
53
HPAP
9
T1D
Genome assembly (visualization)
332
GRCh38
332
hg19
Lab
339
AMP-T2D consortium
53
Klaus Kaestner, Upenn
12
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
33
inconsistent ontology term
assay_title!
DNAme array
BIOSAMPLE
ASSAY
405 results
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Clear Filters
total RNA-seq
small RNA-seq
tissue
islet of Langerhans
284
body of pancreas
3
2
pancreas
2
primary cell
pancreatic alpha cell
52
pancreatic beta cell
21
pancreatic acinar cell
4
pancreatic ductal cell
4
cell line
EndoC_BH1
33
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