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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
1527
total RNA-seq
531
ATAC-seq
369
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
19
Transcription
5
DNA accessibility
Target of assay
5
control
5
nucleotide modification
Date released
20
July, 2019
10
November, 2020
1
August, 2017
1
March, 2023
1
November, 2018
1
October, 2019
Available data
23
bam
23
bigWig
18
tsv
5
bed narrowPeak
5
bigBed narrowPeak
2
fastq
1
tar
Organism
33
Homo sapiens
Biosample type
24
tissue
6
cell line
3
primary cell
1
stem cell
Organ
14
pancreas
7
epithelium
5
brain
3
adipose tissue
3
connective tissue
3
liver
2
kidney
2
musculature of body
1
blood vessel
1
heart
1
vasculature
1
vein
Project
33
AMP
1
community
Genome assembly (visualization)
23
hg19
18
GRCh38
Lab
23
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
1
Anna Gloyn, Oxford
Audit category:
6
inconsistent ontology term
BIOSAMPLE
ASSAY
34 results
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small RNA-seq
MeRIP-seq
FAIRE-seq
CRISPR RNA-seq
tissue
islet of Langerhans
4
1
body of pancreas
2
frontal cortex
1
1
right lobe of liver
2
cerebellum (Hemisphere)
1
+ See 12 more…
cell line
EndoC_BH1
6
primary cell
endothelial cell of umbilical vein
1
mesenchymal stem cell of adipose
1
skeletal muscle satellite cell
1
stem cell
SB Ad3.1
1
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