Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
1527
total RNA-seq
531
ATAC-seq
369
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
18
Transcription
5
DNA accessibility
Date released
20
July, 2019
5
January, 2018
1
August, 2017
1
February, 2023
1
November, 2018
1
October, 2019
Available data
28
bigWig
23
bam
18
tsv
7
fastq
5
bed narrowPeak
5
bigBed narrowPeak
1
tar
Organism
28
Homo sapiens
Biosample type
20
tissue
4
in vitro differentiated cells
3
primary cell
1
cell line
1
stem cell
Organ
5
brain
5
pancreas
3
adipose tissue
3
connective tissue
3
liver
2
epithelium
2
kidney
2
musculature of body
1
blood vessel
1
embryo
1
heart
1
vasculature
1
vein
Project
29
AMP
Genome assembly (visualization)
23
hg19
18
GRCh38
5
hg18
Lab
29
AMP-T2D consortium
BIOSAMPLE
ASSAY
29 results
search-icon
table-tab-icon
Clear Filters
small RNA-seq
FAIRE-seq
GRO-seq
CRISPR genome editing followed by sgRNA sequencing
tissue
body of pancreas
2
frontal cortex
1
1
right lobe of liver
2
cerebellum (Hemisphere)
1
diencephalon
1
+ See 12 more…
in vitro differentiated cells
Posterior foregut
1
definitive endodermal cell
1
pancreatic endoderm
1
primitive gut cell
1
primary cell
endothelial cell of umbilical vein
1
mesenchymal stem cell of adipose
1
skeletal muscle satellite cell
1
cell line
EndoC_BH1
1
stem cell
hESC
1
See all biosamples
Download