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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
1533
total RNA-seq
531
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
18
Transcription
5
DNA accessibility
Date released
84
February, 2021
20
July, 2019
2
December, 2019
1
August, 2017
1
August, 2021
1
November, 2018
1
October, 2019
Available data
84
txt
23
bam
23
bigWig
20
tsv
5
bed narrowPeak
5
bigBed narrowPeak
2
fastq
1
tar
Organism
109
Homo sapiens
Biosample type
107
tissue
3
primary cell
Organ
84
bone element
5
brain
4
adipose tissue
4
connective tissue
4
kidney
4
pancreas
3
liver
2
epithelium
2
musculature of body
1
blood vessel
1
heart
1
vasculature
1
vein
Project
110
AMP
Genome assembly (visualization)
23
hg19
18
GRCh38
Lab
110
AMP-T2D consortium
Audit category:
84
inconsistent ontology term
2
audit script error
BIOSAMPLE
ASSAY
110 results
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RNA microarray
small RNA-seq
FAIRE-seq
tissue
bone element
84
body of pancreas
2
frontal cortex
1
1
right lobe of liver
2
subcutaneous adipose tissue
1
1
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primary cell
endothelial cell of umbilical vein
1
mesenchymal stem cell of adipose
1
skeletal muscle satellite cell
1
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