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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
1533
total RNA-seq
531
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
75
DNA methylation
18
Transcription
5
DNA accessibility
Date released
41
May, 2022
32
July, 2019
10
August, 2017
8
November, 2018
6
February, 2021
1
October, 2019
Available data
41
bam
41
zippedFastqFolder
40
bigWig
24
tsv
19
fastq
17
bed bedMethyl
17
bigBed bedMethyl
5
bed narrowPeak
5
bigBed narrowPeak
1
tar
Organism
98
Homo sapiens
Biosample type
50
primary cell
47
tissue
1
cell line
Organ
55
pancreas
48
epithelium
9
adipose tissue
9
connective tissue
9
heart
8
liver
5
brain
3
blood vessel
3
musculature of body
3
vasculature
2
kidney
2
spleen
1
limb
1
vein
Project
51
AMP
47
HPAP
Genome assembly (visualization)
35
GRCh38
23
hg19
Lab
51
AMP-T2D consortium
47
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
98 results
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WGBS
small RNA-seq
FAIRE-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
endothelial cell of umbilical vein
1
mesenchymal stem cell of adipose
1
skeletal muscle satellite cell
1
tissue
body of pancreas
2
2
heart left ventricle
4
liver
3
1
adipose tissue
3
pancreas
2
1
+ See 20 more…
cell line
HepG2
1
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