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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1290
total RNA-seq
974
ChIP-seq
470
ATAC-seq
235
single cell RNA-seq
200
DNase-seq
87
RNA microarray
58
WGBS
57
snATAC-seq
56
pCHi-C
33
Hi-C
18
small RNA-seq
17
RRBS
10
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
18
Transcription
3
DNA accessibility
Date released
20
July, 2019
1
October, 2019
Available data
23
bam
23
bigWig
18
tsv
5
bed narrowPeak
5
bigBed narrowPeak
fastq
1
tar
Organism
21
Homo sapiens
Biosample type
18
tissue
3
primary cell
Organ
5
brain
3
adipose tissue
3
connective tissue
3
liver
2
kidney
2
musculature of body
2
pancreas
1
blood vessel
1
epithelium
1
heart
1
vasculature
1
vein
Project
21
AMP
Genome assembly (visualization)
21
hg19
18
GRCh38
Lab
21
AMP-T2D consortium
files.file_type!
fastq
BIOSAMPLE
ASSAY
21 results
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small RNA-seq
FAIRE-seq
tissue
body of pancreas
2
frontal cortex
1
1
right lobe of liver
2
cerebellum (Hemisphere)
1
diencephalon
1
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primary cell
endothelial cell of umbilical vein
1
mesenchymal stem cell of adipose
1
skeletal muscle satellite cell
1
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