Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1772
ChIP-seq
1403
total RNA-seq
489
ATAC-seq
354
single cell RNA-seq
208
DNase-seq
84
snATAC-seq
75
WGBS
48
pCHi-C
29
Hi-C
19
RRBS
18
small RNA-seq
5
FAIRE-seq
5
GRO-seq
4
MeRIP-seq
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
29
3D chromatin structure
18
Transcription
Date released
26
July, 2019
8
March, 2020
3
August, 2021
3
October, 2019
3
October, 2022
1
December, 2018
1
March, 2019
1
March, 2023
1
November, 2019
Available data
23
bigWig
18
bam
18
hic
18
tsv
15
bedpe bed3+
5
bed bed3+
5
hdf5
3
cool
1
bedpe
1
fastq
Organism
47
Homo sapiens
Biosample type
32
tissue
12
primary cell
3
cell line
Organ
10
pancreas
8
musculature of body
7
brain
7
epithelium
7
liver
5
blood vessel
5
vasculature
4
connective tissue
4
heart
4
limb
3
adipose tissue
2
kidney
2
vein
Project
43
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
40
hg19
20
GRCh38
Lab
39
AMP-T2D consortium
3
Bing Ren, UCSD
3
Klaus Kaestner, Upenn
1
ITG
1
Katalin Susztak, Upenn
Audit category:
inconsistent ontology term
4
audit script error
Audit category:
1
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
47 results
search-icon
table-tab-icon
Clear Filters
Hi-C
small RNA-seq
tissue
gastrocnemius medialis
4
islet of Langerhans
3
body of pancreas
2
heart
1
1
liver
1
1
+ See 17 more…
primary cell
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
chondrocytes
1
+ See 6 more…
cell line
HepG2
2
Panc1
1
See all biosamples
Download