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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1831
ChIP-seq
1533
total RNA-seq
531
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
5
FAIRE-seq
5
GRO-seq
5
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
18
Transcription
Target of assay
5
control
nucleotide modification
Date released
18
July, 2019
5
November, 2020
Available data
18
bam
18
bigWig
18
tsv
Organism
23
Homo sapiens
Biosample type
18
tissue
3
cell line
2
primary cell
Organ
7
pancreas
4
brain
3
adipose tissue
3
connective tissue
3
epithelium
3
liver
2
musculature of body
1
heart
1
kidney
Project
23
AMP
Genome assembly (visualization)
18
GRCh38
18
hg19
Lab
18
AMP-T2D consortium
5
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
3
inconsistent ontology term
target.investigated_as!
nucleotide modification
BIOSAMPLE
ASSAY
23 results
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small RNA-seq
MeRIP-seq
tissue
body of pancreas
2
islet of Langerhans
2
right lobe of liver
2
cerebellum (Hemisphere)
1
diencephalon
1
+ See 10 more…
cell line
EndoC_BH1
3
primary cell
mesenchymal stem cell of adipose
1
skeletal muscle satellite cell
1
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