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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1831
ChIP-seq
1533
total RNA-seq
531
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
21
DNA methylation
18
Transcription
Date released
84
February, 2021
33
July, 2019
6
August, 2017
2
December, 2019
1
August, 2021
Available data
84
txt
20
tsv
19
bed bedMethyl
19
bigBed bedMethyl
18
bam
18
bigWig
4
fastq
Organism
125
Homo sapiens
Biosample type
114
tissue
12
primary cell
Organ
84
bone element
7
epithelium
7
kidney
7
musculature of body
6
brain
5
connective tissue
5
liver
4
adipose tissue
4
pancreas
3
heart
1
eye
1
pericardium
1
vasculature
Project
126
AMP
Genome assembly (visualization)
37
hg19
18
GRCh38
Lab
126
AMP-T2D consortium
Audit category:
86
inconsistent ontology term
2
audit script error
BIOSAMPLE
ASSAY
126 results
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RNA microarray
RRBS
small RNA-seq
tissue
bone element
84
skeletal muscle tissue
4
1
body of pancreas
2
liver
1
1
right lobe of liver
2
+ See 18 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 7 more…
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