Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1831
ChIP-seq
1533
total RNA-seq
531
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
75
DNA methylation
18
Transcription
Date released
41
May, 2022
30
July, 2019
9
August, 2017
7
November, 2018
6
February, 2021
Available data
41
zippedFastqFolder
36
bam
35
bigWig
24
tsv
17
bed bedMethyl
17
bigBed bedMethyl
17
fastq
Organism
93
Homo sapiens
Biosample type
49
primary cell
43
tissue
1
cell line
Organ
53
pancreas
47
epithelium
9
adipose tissue
9
connective tissue
9
heart
8
liver
4
brain
3
musculature of body
2
blood vessel
2
spleen
2
vasculature
1
kidney
1
limb
Project
47
HPAP
46
AMP
Genome assembly (visualization)
35
GRCh38
18
hg19
Lab
47
Klaus Kaestner, Upenn
46
AMP-T2D consortium
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
93 results
search-icon
table-tab-icon
Clear Filters
WGBS
small RNA-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
mesenchymal stem cell of adipose
1
skeletal muscle satellite cell
1
tissue
body of pancreas
2
2
heart left ventricle
4
liver
3
1
adipose tissue
3
right lobe of liver
1
2
+ See 18 more…
cell line
HepG2
1
See all biosamples
Download