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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1831
ChIP-seq
1533
total RNA-seq
531
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
84
DNA accessibility
75
DNA methylation
18
Transcription
Date released
63
May, 2022
33
February, 2021
30
July, 2019
16
January, 2021
10
April, 2020
9
August, 2017
7
November, 2018
6
August, 2021
2
February, 2023
1
August, 2022
Available data
62
zippedFastqFolder
44
fastq
36
bam
35
bigWig
24
tsv
17
bed bedMethyl
17
bigBed bedMethyl
1
bed bed3+
1
txt
Organism
176
Homo sapiens
Biosample type
105
primary cell
71
tissue
1
cell line
Organ
64
pancreas
47
epithelium
10
lung
9
adipose tissue
9
connective tissue
9
heart
8
blood
8
bodily fluid
8
liver
7
kidney
4
brain
4
musculature of body
2
blood vessel
2
spleen
2
vasculature
1
limb
Project
95
HPAP
54
AMP
18
T1D
10
LungMap
Genome assembly (visualization)
35
GRCh38
19
hg19
Lab
95
Klaus Kaestner, Upenn
48
AMP-T2D consortium
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
Audit category:
29
audit script error
BIOSAMPLE
ASSAY
177 results
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snATAC-seq
WGBS
small RNA-seq
primary cell
Langerhans cell
48
pancreatic alpha cell
31
pancreatic beta cell
16
peripheral blood mononuclear cell
8
mesenchymal stem cell of adipose
1
+ See 1 more…
tissue
lung
10
islet of Langerhans
7
kidney
6
pancreas
4
2
body of pancreas
2
2
+ See 21 more…
cell line
HepG2
1
See all biosamples
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