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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1290
total RNA-seq
974
ChIP-seq
470
ATAC-seq
235
single cell RNA-seq
200
DNase-seq
87
RNA microarray
58
WGBS
57
snATAC-seq
56
pCHi-C
33
Hi-C
18
small RNA-seq
17
RRBS
10
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
58
DNA methylation
18
Transcription
Date released
41
May, 2022
30
July, 2019
5
August, 2017
Available data
41
zippedFastqFolder
36
bam
35
bigWig
24
tsv
17
bed bedMethyl
17
bigBed bedMethyl
fastq
Organism
76
Homo sapiens
Biosample type
43
primary cell
33
tissue
Organ
43
pancreas
41
epithelium
9
heart
6
adipose tissue
6
connective tissue
6
liver
4
brain
3
musculature of body
2
blood vessel
2
vasculature
1
kidney
1
limb
Project
41
HPAP
35
AMP
Genome assembly (visualization)
26
GRCh38
18
hg19
Lab
41
Klaus Kaestner, Upenn
35
AMP-T2D consortium
files.file_type!
fastq
BIOSAMPLE
ASSAY
76 results
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WGBS
small RNA-seq
primary cell
pancreatic alpha cell
25
pancreatic beta cell
16
mesenchymal stem cell of adipose
1
skeletal muscle satellite cell
1
tissue
heart left ventricle
4
liver
2
1
right lobe of liver
1
2
subcutaneous abdominal adipose tissue
3
aorta
2
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