Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1613
ChIP-seq
1516
total RNA-seq
527
ATAC-seq
360
single cell RNA-seq
180
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
55
pCHi-C
31
Hi-C
19
RRBS
14
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
75
DNA methylation
14
Transcription
Date released
41
May, 2022
26
July, 2019
9
August, 2017
7
November, 2018
6
February, 2021
Available data
41
zippedFastqFolder
32
bam
31
bigWig
20
tsv
17
bed bedMethyl
17
bigBed bedMethyl
17
fastq
Organism
89
Homo sapiens
Biosample type
49
primary cell
39
tissue
1
cell line
Organ
53
pancreas
47
epithelium
9
adipose tissue
9
connective tissue
9
heart
8
liver
brain
3
musculature of body
2
blood vessel
2
spleen
2
vasculature
1
kidney
1
limb
Project
47
HPAP
42
AMP
Genome assembly (visualization)
31
GRCh38
14
hg19
Lab
47
Klaus Kaestner, Upenn
42
AMP-T2D consortium
organ_slims!
brain
BIOSAMPLE
ASSAY
89 results
search-icon
table-tab-icon
Clear Filters
WGBS
small RNA-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
mesenchymal stem cell of adipose
1
skeletal muscle satellite cell
1
tissue
body of pancreas
2
2
heart left ventricle
4
liver
3
1
adipose tissue
3
right lobe of liver
1
2
+ See 14 more…
cell line
HepG2
1
See all biosamples
Download