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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1831
ChIP-seq
1533
total RNA-seq
531
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
21
DNA methylation
18
Transcription
Date released
33
July, 2019
32
March, 2020
17
May, 2021
6
August, 2017
4
October, 2019
2
February, 2021
1
August, 2018
1
May, 2020
Available data
49
tsv
19
bam
19
bed bedMethyl
19
bigBed bedMethyl
18
bigWig
5
fastq
3
bedpe bed3+
2
bed bed3+
2
ibed
Organism
96
Homo sapiens
Biosample type
52
tissue
29
primary cell
6
cell line
5
in vitro differentiated cells
4
stem cell
Organ
9
connective tissue
8
brain
8
liver
8
musculature of body
7
kidney
6
epithelium
6
heart
5
adipose tissue
5
eye
5
pancreas
2
intestine
2
thymus
2
vasculature
1
adrenal gland
1
blood vessel
1
bone element
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spleen
1
stomach
1
urinary bladder
Project
79
AMP
17
T1D
Genome assembly (visualization)
41
hg19
18
GRCh38
Lab
79
AMP-T2D consortium
17
Kyle Gaulton, UCSD
Audit category:
11
inconsistent ontology term
BIOSAMPLE
ASSAY
96 results
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pCHi-C
RRBS
small RNA-seq
tissue
islet of Langerhans
4
1
skeletal muscle tissue
4
1
liver
1
1
1
body of pancreas
2
heart left ventricle
1
1
+ See 32 more…
primary cell
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
activated CD4-positive, alpha-beta T cell
1
adult endothelial progenitor cell
1
+ See 23 more…
cell line
HepG2
2
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
fibroblast cell line
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
embryonic stem cell
1
lymphocyte of B lineage (iPSC)
1
white fat cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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