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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
474
total RNA-seq
153
ChIP-seq
25
ATAC-seq
8
DNase-seq
6
WGBS
5
pCHi-C
4
single cell RNA-seq
3
small RNA-seq
2
Capture-C
1
RNA microarray
1
RRBS
Assay category
25
DNA accessibility
3
Transcription
Date released
10
February, 2023
5
February, 2021
3
July, 2019
3
October, 2019
2
August, 2021
1
August, 2017
1
January, 2018
1
November, 2019
1
November, 2020
1
October, 2017
Available data
12
bigWig
8
bam
8
bed narrowPeak
6
bed bed3
4
bed bed3+
4
bed bedgraph
4
bigBed narrowPeak
3
tsv
2
fastq
Organism
28
Homo sapiens
Biosample type
17
in vitro differentiated cells
8
tissue
3
primary cell
Organ
154
pancreas
103
epithelium
76
kidney
48
heart
46
blood vessel
46
vasculature
45
artery
28
connective tissue
28
eye
26
liver
12
bone element
12
skeleton
9
adipose tissue
brain
8
limb
3
musculature of body
1
blood
1
bodily fluid
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
28
AMP
Genome assembly (visualization)
28
hg19
8
GRCh38
Lab
26
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
organ_slims!
brain
BIOSAMPLE
ASSAY
28 results
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ATAC-seq
small RNA-seq
in vitro differentiated cells
adipocyte
8
chondrocyte
5
immature adipocyte
2
osteoblast
1
preadipocyte
1
tissue
adipose tissue
3
omental fat pad
1
1
subcutaneous adipose tissue
1
1
adipose tissue(adipose white tissue)
1
primary cell
osteoblast
2
mesenchymal stem cell of adipose
1
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