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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1653
ChIP-seq
1516
total RNA-seq
527
ATAC-seq
360
single cell RNA-seq
180
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
55
pCHi-C
31
Hi-C
19
RRBS
14
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
14
Transcription
4
DNA accessibility
Date released
15
July, 2019
1
August, 2017
1
November, 2018
1
October, 2019
Available data
18
bam
18
bigWig
14
tsv
4
bed narrowPeak
4
bigBed narrowPeak
2
fastq
1
tar
Organism
18
Homo sapiens
Biosample type
15
tissue
3
primary cell
Organ
brain
4
pancreas
3
adipose tissue
3
connective tissue
3
liver
2
kidney
2
musculature of body
1
blood vessel
1
epithelium
1
heart
1
vasculature
1
vein
Project
18
AMP
Genome assembly (visualization)
18
hg19
14
GRCh38
Lab
18
AMP-T2D consortium
organ_slims!
brain
BIOSAMPLE
ASSAY
18 results
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small RNA-seq
FAIRE-seq
tissue
body of pancreas
2
right lobe of liver
2
heart
1
islet of Langerhans
1
kidney
1
+ See 8 more…
primary cell
endothelial cell of umbilical vein
1
mesenchymal stem cell of adipose
1
skeletal muscle satellite cell
1
See all biosamples
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