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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1653
ChIP-seq
1516
total RNA-seq
527
ATAC-seq
360
single cell RNA-seq
180
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
55
pCHi-C
31
Hi-C
19
RRBS
14
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
14
Transcription
Target of assay
5
control
5
nucleotide modification
Date released
14
July, 2019
10
November, 2020
4
August, 2021
Available data
14
bam
14
bigWig
14
tsv
2
bed bed3+
Organism
28
Homo sapiens
Biosample type
16
tissue
8
cell line
2
in vitro differentiated cells
2
primary cell
Organ
14
pancreas
8
epithelium
5
connective tissue
brain
3
adipose tissue
3
liver
2
musculature of body
1
heart
1
kidney
Project
28
AMP
Genome assembly (visualization)
16
hg19
14
GRCh38
Lab
16
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
2
Struan F.A. Grant, CHOP
Audit category:
8
inconsistent ontology term
organ_slims!
brain
BIOSAMPLE
ASSAY
28 results
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small RNA-seq
MeRIP-seq
Capture-C
tissue
islet of Langerhans
4
body of pancreas
2
right lobe of liver
2
heart
1
liver
1
+ See 6 more…
cell line
EndoC_BH1
6
2
in vitro differentiated cells
adipocyte
1
osteoblast
1
primary cell
mesenchymal stem cell of adipose
1
skeletal muscle satellite cell
1
See all biosamples
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