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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1344
total RNA-seq
1279
ChIP-seq
508
ATAC-seq
362
single cell RNA-seq
206
DNase-seq
87
RNA microarray
84
snATAC-seq
70
WGBS
54
pCHi-C
30
Hi-C
19
RRBS
15
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
15
Transcription
Date released
15
July, 2019
4
August, 2021
Available data
15
bam
15
bigWig
15
tsv
2
bed bed3+
Organism
19
Homo sapiens
Biosample type
13
tissue
2
cell line
2
in vitro differentiated cells
2
primary cell
Organ
5
connective tissue
4
brain
4
pancreas
3
adipose tissue
liver
2
epithelium
2
musculature of body
1
heart
1
kidney
Project
19
AMP
Genome assembly (visualization)
17
hg19
15
GRCh38
Lab
17
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
organ_slims!
liver
BIOSAMPLE
ASSAY
19 results
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small RNA-seq
Capture-C
tissue
body of pancreas
2
cerebellum (Hemisphere)
1
diencephalon
1
frontal cortex
1
heart
1
+ See 7 more…
cell line
EndoC_BH1
2
in vitro differentiated cells
adipocyte
1
osteoblast
1
primary cell
mesenchymal stem cell of adipose
1
skeletal muscle satellite cell
1
See all biosamples
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