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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1278
total RNA-seq
1267
ChIP-seq
433
ATAC-seq
304
single cell RNA-seq
125
DNase-seq
85
RNA microarray
78
snATAC-seq
70
WGBS
52
pCHi-C
29
Hi-C
15
RRBS
14
small RNA-seq
10
MeRIP-seq
5
GRO-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
STARR-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
14
Transcription
Date released
14
July, 2019
4
August, 2021
Available data
14
bam
14
bigWig
14
tsv
2
bed bed3+
Organism
18
Homo sapiens
Biosample type
12
tissue
2
cell line
2
in vitro differentiated cells
2
primary cell
Organ
5
connective tissue
4
brain
4
pancreas
3
adipose tissue
liver
2
epithelium
2
musculature of body
1
heart
kidney
Project
18
AMP
Genome assembly (visualization)
16
hg19
14
GRCh38
Lab
16
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
organ_slims!
liver
kidney
BIOSAMPLE
ASSAY
18 results
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small RNA-seq
Capture-C
tissue
body of pancreas
2
cerebellum (Hemisphere)
1
diencephalon
1
frontal cortex
1
heart
1
+ See 6 more…
cell line
EndoC_BH1
2
in vitro differentiated cells
adipocyte
1
osteoblast
1
primary cell
mesenchymal stem cell of adipose
1
skeletal muscle satellite cell
1
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