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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1783
ChIP-seq
1422
total RNA-seq
481
ATAC-seq
317
single cell RNA-seq
212
DNase-seq
87
RNA microarray
45
snATAC-seq
40
pCHi-C
Hi-C
34
WGBS
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
snDrop-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
45
DNA accessibility
Date released
27
February, 2021
10
April, 2020
6
August, 2021
1
August, 2022
1
May, 2022
Available data
27
fastq
zippedFastqFolder
1
bed bed3+
1
txt
Organism
44
Homo sapiens
Biosample type
27
primary cell
18
tissue
Organ
10
lung
6
kidney
1
musculature of body
1
pancreas
Project
27
HPAP
T1D
10
LungMap
8
AMP
Genome assembly (visualization)
1
hg19
Lab
27
Klaus Kaestner, Upenn
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
2
AMP-T2D consortium
Audit category:
29
audit script error
assay_title!
Hi-C
files.file_type!
zippedFastqFolder
award.project!
T1D
BIOSAMPLE
ASSAY
45 results
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snATAC-seq
primary cell
Langerhans cell
27
tissue
lung
10
kidney
6
islet of Langerhans
1
skeletal muscle tissue
1
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