Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1653
ChIP-seq
1130
total RNA-seq
379
ATAC-seq
289
single cell RNA-seq
204
DNase-seq
86
RNA microarray
72
snATAC-seq
56
pCHi-C
25
Hi-C
24
WGBS
19
RRBS
16
small RNA-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
Capture-C
2
HiChIP
1
DNAme array
1
whole genome sequencing assay
Assay category
72
DNA accessibility
Date released
27
February, 2021
22
May, 2022
9
April, 2020
8
January, 2021
6
August, 2021
Available data
27
fastq
21
zippedFastqFolder
1
bed bed3+
1
txt
Organism
72
Homo sapiens
Biosample type
56
primary cell
16
tissue
Organ
pancreas
9
lung
8
blood
8
bodily fluid
6
kidney
1
musculature of body
Project
48
HPAP
9
LungMap
8
T1D
7
AMP
Genome assembly (visualization)
1
hg19
Lab
48
Klaus Kaestner, Upenn
9
Xin Sun, UCSD
8
Kyle Gaulton, UCSD
6
Katalin Susztak, Upenn
1
AMP-T2D consortium
Audit category:
28
audit script error
assay_title!
shRNA RNA-seq
organ_slims!
pancreas
BIOSAMPLE
ASSAY
72 results
search-icon
table-tab-icon
Clear Filters
snATAC-seq
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
tissue
lung
9
kidney
6
skeletal muscle tissue
1
Download