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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
1527
total RNA-seq
531
ATAC-seq
369
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
84
DNA accessibility
21
DNA methylation
1
Transcription
Date released
27
February, 2021
22
May, 2022
16
January, 2021
15
July, 2019
10
April, 2020
6
August, 2017
6
August, 2021
2
February, 2023
1
August, 2022
1
March, 2023
Available data
31
fastq
21
zippedFastqFolder
19
bed bedMethyl
19
bigBed bedMethyl
1
bed bed3+
1
txt
Organism
104
Homo sapiens
Biosample type
66
primary cell
39
tissue
1
cell line
Organ
13
pancreas
10
kidney
10
lung
8
blood
8
bodily fluid
6
epithelium
6
musculature of body
2
brain
2
heart
2
liver
1
connective tissue
1
eye
1
pericardium
1
vasculature
Project
48
HPAP
29
AMP
18
T1D
10
LungMap
1
community
Genome assembly (visualization)
20
hg19
Lab
48
Klaus Kaestner, Upenn
23
AMP-T2D consortium
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
1
Anna Gloyn, Oxford
Audit category:
29
audit script error
2
inconsistent ontology term
assay_title!
siRNA RNA-seq
BIOSAMPLE
ASSAY
106 results
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snATAC-seq
RRBS
shRNA RNA-seq
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
+ See 7 more…
tissue
lung
10
islet of Langerhans
7
1
kidney
6
1
pancreas
4
1
skeletal muscle tissue
1
4
+ See 4 more…
cell line
EndoC-BH1
1
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