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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
526
ChIP-seq
270
ATAC-seq
263
single cell RNA-seq
248
total RNA-seq
87
RNA microarray
83
snATAC-seq
75
WGBS
53
pCHi-C
26
DNase-seq
10
MeRIP-seq
7
Hi-C
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
353
DNA accessibility
Date released
70
August, 2021
60
February, 2023
60
May, 2022
55
May, 2020
27
February, 2021
16
January, 2021
16
May, 2021
13
October, 2019
11
May, 2023
10
April, 2020
7
August, 2020
3
September, 2020
2
March, 2019
1
August, 2022
1
July, 2019
1
October, 2017
Available data
99
bed narrowPeak
64
xls
60
zippedFastqFolder
39
fastq
12
bigWig
12
tsv
3
bam
1
bed broadPeak
Organism
352
Homo sapiens
Biosample type
172
primary cell
165
tissue
16
cell line
Organ
92
pancreas
81
kidney
65
epithelium
35
artery
35
blood vessel
35
heart
35
vasculature
10
lung
8
blood
8
bodily fluid
3
brain
1
eye
1
pituitary gland
1
skin of body
Project
217
AMP
97
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
hg19
234
GRCh38
Lab
134
AMP-T2D consortium
97
Klaus Kaestner, Upenn
81
Katalin Susztak, Upenn
29
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
28
audit script error
22
inconsistent ontology term
assembly!
hg19
BIOSAMPLE
ASSAY
353 results
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Clear Filters
ATAC-seq
snATAC-seq
primary cell
Langerhans cell
48
pancreatic alpha cell
29
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
pancreatic beta cell
16
+ See 7 more…
tissue
kidney
75
6
coronary artery
35
islet of Langerhans
26
7
lung
10
pancreas
4
+ See 2 more…
cell line
EndoC_BH1
16
See all biosamples
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