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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1290
total RNA-seq
1014
ChIP-seq
470
ATAC-seq
235
single cell RNA-seq
200
DNase-seq
87
RNA microarray
58
WGBS
57
snATAC-seq
56
pCHi-C
33
Hi-C
18
small RNA-seq
17
RRBS
10
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
57
DNA accessibility
Date released
22
May, 2022
16
January, 2021
10
April, 2020
10
August, 2021
2
February, 2023
1
August, 2022
Available data
fastq
21
zippedFastqFolder
3
bed bed3+
1
txt
Organism
60
Homo sapiens
Biosample type
29
primary cell
28
tissue
2
cell line
2
in vitro differentiated cells
Organ
13
pancreas
10
lung
8
blood
8
bodily fluid
6
kidney
2
connective tissue
2
epithelium
1
musculature of body
Project
21
HPAP
18
T1D
12
AMP
10
LungMap
Genome assembly (visualization)
3
hg19
Lab
21
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
4
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
2
audit script error
2
inconsistent ontology term
assay_title!
DNAme array
files.file_type!
fastq
BIOSAMPLE
ASSAY
61 results
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snATAC-seq
Capture-C
primary cell
Langerhans cell
21
peripheral blood mononuclear cell
8
tissue
lung
10
islet of Langerhans
7
kidney
6
pancreas
4
skeletal muscle tissue
1
cell line
EndoC_BH1
2
in vitro differentiated cells
adipocyte
1
osteoblast
1
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