Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1819
ChIP-seq
1467
total RNA-seq
456
ATAC-seq
303
single cell RNA-seq
131
DNase-seq
85
RNA microarray
75
WGBS
55
pCHi-C
49
snATAC-seq
29
Hi-C
17
RRBS
17
small RNA-seq
10
MeRIP-seq
5
GRO-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
49
DNA accessibility
Date released
21
May, 2022
16
January, 2021
10
April, 2020
4
August, 2021
2
February, 2023
Available data
21
zippedFastqFolder
2
bed bed3+
Organism
52
Homo sapiens
Biosample type
29
primary cell
20
tissue
2
cell line
2
in vitro differentiated cells
Organ
12
pancreas
10
lung
8
blood
8
bodily fluid
kidney
2
connective tissue
2
epithelium
Project
21
HPAP
18
T1D
10
LungMap
4
AMP
Genome assembly (visualization)
2
hg19
Lab
21
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
2
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
audit script error
2
inconsistent ontology term
audit.ERROR.category!
audit script error
organ_slims!
kidney
BIOSAMPLE
ASSAY
53 results
search-icon
table-tab-icon
Clear Filters
snATAC-seq
Capture-C
primary cell
Langerhans cell
21
peripheral blood mononuclear cell
8
tissue
lung
10
islet of Langerhans
6
pancreas
4
cell line
EndoC_BH1
2
in vitro differentiated cells
adipocyte
1
osteoblast
1
Download