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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1871ChIP-seq
  • 1527total RNA-seq
  • 531ATAC-seq
  • 369single cell RNA-seq
  • 212DNase-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 75WGBS
  • 57pCHi-C
  • 34Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 296DNA accessibility
Date released
  • 187June, 2019
  • 27February, 2021
  • 22May, 2022
  • 16January, 2021
  • 10April, 2020
  • 10October, 2019
  • 9November, 2018
  • 6August, 2021
  • 5August, 2017
  • 2February, 2023
  • 1August, 2022
  • 1November, 2020
Available data
  • 209bam
  • 209bed narrowPeak
  • 209bigBed narrowPeak
  • 209bigWig
  • 206bed broadPeak
  • 206bigBed broadPeak
  • 205bed bed3+
  • 39fastq
  • 21zippedFastqFolder
  • 1txt
Organism
  • 295Homo sapiens
Biosample type
  • 206tissue
  • 87primary cell
  • 2cell line
  • 1in vitro differentiated cells
Organ
  • 87kidney
  • 36limb
  • 34musculature of body
  • 32brain
  • 30heart
  • 19epithelium
  • 19pancreas
  • 18ureter
  • 11vasculature
  • 10lung
  • 9blood vessel
  • 9connective tissue
  • 8blood
  • 8bodily fluid
  • 6liver
  • 4artery
  • 4eye
  • 2adipose tissue
  • 2nerve
  • 2vein
  • 1spleen
Project
  • 220AMP
  • 48HPAP
  • 18T1D
  • 10LungMap
Genome assembly (visualization)
  • 207GRCh38
  • 187hg19
Lab
  • 214AMP-T2D consortium
  • 48Klaus Kaestner, Upenn
  • 18Kyle Gaulton, UCSD
  • 10Xin Sun, UCSD
  • 6Katalin Susztak, Upenn
Audit category:
  • 29audit script error
  • 4inconsistent ontology term
BIOSAMPLE
ASSAY

296 results

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Clear Filters
DNase-seq
snATAC-seq
tissue
kidney136
heart18
muscle of arm17
brain14
muscle of leg13
primary cell
Langerhans cell48
peripheral blood mononuclear cell8
cardiac fibroblast3
kidney tubule cell3
endothelial cell of umbilical vein2
cell line
Panc11
glomerular visceral epithelial cell1
in vitro differentiated cells
adipocyte1
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