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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
1435
total RNA-seq
482
ATAC-seq
284
single cell RNA-seq
212
DNase-seq
87
RNA microarray
57
pCHi-C
36
snATAC-seq
31
Hi-C
28
WGBS
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
36
DNA accessibility
Date released
16
January, 2021
10
April, 2020
6
August, 2021
5
January, 2018
3
February, 2023
1
August, 2022
1
May, 2022
Available data
5
bigWig
5
fastq
1
bed bed3+
1
txt
Organism
40
Homo sapiens
Biosample type
28
tissue
8
primary cell
4
in vitro differentiated cells
1
cell line
1
stem cell
Organ
12
pancreas
10
lung
8
blood
8
bodily fluid
6
kidney
1
embryo
1
epithelium
1
musculature of body
Project
18
T1D
14
AMP
10
LungMap
Genome assembly (visualization)
5
hg18
1
hg19
Lab
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
8
AMP-T2D consortium
6
Katalin Susztak, Upenn
Audit category:
2
audit script error
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
42 results
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snATAC-seq
GRO-seq
CRISPR genome editing followed by sgRNA sequencing
tissue
lung
10
islet of Langerhans
7
kidney
6
pancreas
4
skeletal muscle tissue
1
primary cell
peripheral blood mononuclear cell
8
in vitro differentiated cells
Posterior foregut
1
definitive endodermal cell
1
pancreatic endoderm
1
primitive gut cell
1
cell line
EndoC_BH1
1
stem cell
hESC
1
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