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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1871ChIP-seq
  • 1527total RNA-seq
  • 531ATAC-seq
  • 369single cell RNA-seq
  • 212DNase-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 75WGBS
  • 57pCHi-C
  • 34Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 84DNA accessibility
  • 21DNA methylation
Date released
  • 27February, 2021
  • 22May, 2022
  • 16January, 2021
  • 15July, 2019
  • 10April, 2020
  • 6August, 2017
  • 6August, 2021
  • 2February, 2023
  • 1August, 2022
Available data
  • 31fastq
  • 21zippedFastqFolder
  • 19bed bedMethyl
  • 19bigBed bedMethyl
  • 1bed bed3+
  • 1txt
Organism
  • 104Homo sapiens
Biosample type
  • 66primary cell
  • 39tissue
Organ
  • 13pancreas
  • 10kidney
  • 10lung
  • 8blood
  • 8bodily fluid
  • 6epithelium
  • 6musculature of body
  • 2brain
  • 2heart
  • 2liver
  • 1connective tissue
  • 1eye
  • 1pericardium
  • 1vasculature
Project
  • 48HPAP
  • 29AMP
  • 18T1D
  • 10LungMap
Genome assembly (visualization)
  • 20hg19
Lab
  • 48Klaus Kaestner, Upenn
  • 23AMP-T2D consortium
  • 18Kyle Gaulton, UCSD
  • 10Xin Sun, UCSD
  • 6Katalin Susztak, Upenn
Audit category:
  • 29audit script error
  • 2inconsistent ontology term
BIOSAMPLE
ASSAY

105 results

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Clear Filters
snATAC-seq
RRBS
primary cell
Langerhans cell48
peripheral blood mononuclear cell8
cardiac fibroblast1
cardiac muscle cell1
choroid plexus epithelial cell1
tissue
lung10
islet of Langerhans71
kidney61
pancreas41
skeletal muscle tissue14
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