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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1778
ChIP-seq
1531
total RNA-seq
527
ATAC-seq
363
single cell RNA-seq
87
RNA microarray
83
snATAC-seq
75
WGBS
55
pCHi-C
29
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
8
DNase-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
83
DNA accessibility
21
DNA methylation
Date released
27
February, 2021
21
May, 2022
16
January, 2021
15
July, 2019
10
April, 2020
6
August, 2017
6
August, 2021
2
February, 2023
1
August, 2022
Available data
31
fastq
21
zippedFastqFolder
19
bed bedMethyl
19
bigBed bedMethyl
bed bed3+
1
txt
Organism
103
Homo sapiens
Biosample type
66
primary cell
38
tissue
Organ
13
pancreas
10
kidney
10
lung
8
blood
8
bodily fluid
6
epithelium
5
musculature of body
2
brain
2
heart
2
liver
1
connective tissue
1
eye
1
pericardium
1
vasculature
Project
48
HPAP
28
AMP
18
T1D
10
LungMap
Genome assembly (visualization)
19
hg19
Lab
48
Klaus Kaestner, Upenn
22
AMP-T2D consortium
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
Audit category:
28
audit script error
2
inconsistent ontology term
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
104 results
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snATAC-seq
RRBS
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
+ See 7 more…
tissue
lung
10
islet of Langerhans
7
1
kidney
6
1
pancreas
4
1
skeletal muscle tissue
4
+ See 4 more…
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