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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
481
ChIP-seq
395
ATAC-seq
263
single cell RNA-seq
249
total RNA-seq
87
RNA microarray
84
snATAC-seq
58
WGBS
57
pCHi-C
29
Hi-C
21
RRBS
10
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
84
DNA accessibility
58
DNA methylation
Date released
63
May, 2022
33
February, 2021
16
January, 2021
11
August, 2021
10
April, 2020
7
August, 2017
4
July, 2019
2
February, 2023
1
August, 2022
Available data
62
zippedFastqFolder
44
fastq
18
bam
17
bed bedMethyl
17
bigBed bedMethyl
bigWig
6
tsv
1
bed bed3+
1
txt
Organism
146
Homo sapiens
Biosample type
103
primary cell
39
tissue
5
cell line
Organ
58
pancreas
47
epithelium
10
lung
8
blood
8
bodily fluid
8
kidney
6
liver
4
adipose tissue
4
connective tissue
2
heart
1
blood vessel
1
musculature of body
1
vasculature
Project
95
HPAP
24
AMP
18
T1D
10
LungMap
Genome assembly (visualization)
1
hg19
Lab
95
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
13
AMP-T2D consortium
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
5
Bing Ren, UCSD
Audit category:
29
audit script error
1
inconsistent ontology term
files.file_type!
bigWig
BIOSAMPLE
ASSAY
147 results
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snATAC-seq
WGBS
STARR-seq
primary cell
Langerhans cell
48
pancreatic alpha cell
31
pancreatic beta cell
16
peripheral blood mononuclear cell
8
tissue
lung
10
islet of Langerhans
7
kidney
6
pancreas
4
liver
3
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cell line
HEK293T
2
HepG2
2
Synthesized DNA
1
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