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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1659
ChIP-seq
1247
total RNA-seq
343
ATAC-seq
212
DNase-seq
211
single cell RNA-seq
87
RNA microarray
40
pCHi-C
28
WGBS
26
Hi-C
21
RRBS
18
small RNA-seq
5
FAIRE-seq
5
GRO-seq
3
snDrop-seq
2
Capture-C
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
MPRA
Assay category
28
DNA methylation
2
DNA accessibility
Date released
12
July, 2019
9
August, 2017
7
November, 2018
1
August, 2022
1
May, 2022
Available data
18
bam
17
bed bedMethyl
17
bigBed bedMethyl
17
bigWig
11
fastq
1
bed bed3+
1
txt
Organism
30
Homo sapiens
Biosample type
29
tissue
1
cell line
Organ
8
heart
6
adipose tissue
6
connective tissue
5
liver
5
pancreas
2
blood vessel
2
musculature of body
2
spleen
2
vasculature
1
limb
Project
30
AMP
Genome assembly (visualization)
17
GRCh38
1
hg19
Lab
95
Klaus Kaestner, Upenn
30
AMP-T2D consortium
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
Audit category:
2
audit script error
BIOSAMPLE
ASSAY
30 results
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WGBS
snATAC-seq
tissue
heart left ventricle
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
aorta
2
+ See 10 more…
cell line
HepG2
1
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