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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1828
ChIP-seq
1453
total RNA-seq
455
ATAC-seq
263
single cell RNA-seq
212
DNase-seq
86
RNA microarray
78
snATAC-seq
75
WGBS
57
pCHi-C
31
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
78
DNA accessibility
19
Transcription
Date released
27
February, 2021
22
May, 2022
18
July, 2019
16
January, 2021
10
April, 2020
August, 2021
2
February, 2023
1
August, 2022
1
March, 2023
Available data
27
fastq
21
zippedFastqFolder
18
bam
18
bigWig
18
tsv
1
bed bed3+
1
txt
Organism
95
Homo sapiens
Biosample type
58
primary cell
38
tissue
1
cell line
Organ
13
pancreas
10
lung
8
blood
8
bodily fluid
4
brain
3
adipose tissue
3
connective tissue
3
liver
3
musculature of body
1
heart
1
kidney
Project
48
HPAP
20
AMP
18
T1D
10
LungMap
1
community
Genome assembly (visualization)
19
hg19
18
GRCh38
Lab
48
Klaus Kaestner, Upenn
20
AMP-T2D consortium
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
1
Anna Gloyn, Oxford
Audit category:
29
audit script error
month_released!
August, 2021
BIOSAMPLE
ASSAY
97 results
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snATAC-seq
small RNA-seq
shRNA RNA-seq
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
mesenchymal stem cell of adipose
1
skeletal muscle satellite cell
1
tissue
lung
10
islet of Langerhans
7
pancreas
4
body of pancreas
2
right lobe of liver
2
+ See 12 more…
cell line
EndoC-BH1
1
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