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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1633
ChIP-seq
1397
total RNA-seq
489
ATAC-seq
361
single cell RNA-seq
211
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
52
pCHi-C
30
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
361
Transcription
84
DNA accessibility
Target of assay
3
control
Date released
112
August, 2021
56
May, 2022
48
July, 2018
47
September, 2023
45
February, 2021
43
April, 2018
40
September, 2020
19
April, 2020
16
January, 2021
3
August, 2018
3
February, 2023
3
July, 2019
3
June, 2018
3
May, 2023
1
August, 2022
1
December, 2019
1
November, 2018
1
September, 2018
Available data
203
tsv
155
fastq
100
bam
100
bigWig
73
zippedFastqFolder
14
txt
8
csv
1
bed bed3+
Organism
444
Homo sapiens
Biosample type
243
primary cell
202
tissue
in vitro differentiated cells
Organ
93
heart
85
pancreas
70
epithelium
70
kidney
19
lung
8
blood
8
bodily fluid
6
blood vessel
6
vasculature
4
connective tissue
3
brain
2
artery
2
musculature of body
1
liver
Project
228
AMP
133
HPAP
47
KPMP
19
LungMap
18
T1D
Genome assembly (visualization)
101
hg19
100
GRCh38
Lab
211
AMP-T2D consortium
133
Klaus Kaestner, Upenn
47
KPMP
19
Xin Sun, UCSD
18
Kyle Gaulton, UCSD
17
Katalin Susztak, Upenn
Audit category:
34
audit script error
7
inconsistent ontology term
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
445 results
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single cell RNA-seq
snATAC-seq
primary cell
Langerhans cell
85
48
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
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tissue
kidney
64
6
lung
9
10
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
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