Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1831
ChIP-seq
1533
total RNA-seq
531
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
87
RNA microarray
75
WGBS
68
snATAC-seq
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
68
DNA accessibility
18
Transcription
Date released
27
February, 2021
22
May, 2022
18
July, 2019
January, 2021
10
April, 2020
6
August, 2021
2
February, 2023
1
August, 2022
Available data
27
fastq
21
zippedFastqFolder
18
bam
18
bigWig
18
tsv
1
bed bed3+
1
txt
Organism
85
Homo sapiens
Biosample type
50
primary cell
36
tissue
Organ
10
lung
7
kidney
5
pancreas
4
brain
3
adipose tissue
3
connective tissue
3
liver
3
musculature of body
1
heart
Project
48
HPAP
26
AMP
10
LungMap
2
T1D
Genome assembly (visualization)
19
hg19
18
GRCh38
Lab
48
Klaus Kaestner, Upenn
20
AMP-T2D consortium
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
2
Kyle Gaulton, UCSD
Audit category:
29
audit script error
month_released!
January, 2021
BIOSAMPLE
ASSAY
86 results
search-icon
table-tab-icon
Clear Filters
snATAC-seq
small RNA-seq
primary cell
Langerhans cell
48
mesenchymal stem cell of adipose
1
skeletal muscle satellite cell
1
tissue
lung
10
kidney
6
islet of Langerhans
3
body of pancreas
2
right lobe of liver
2
+ See 12 more…
See all biosamples
Download