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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 893total RNA-seq
  • 510ChIP-seq
  • 129DNase-seq
  • 121ATAC-seq
  • 15small RNA-seq
  • 9Hi-C
  • 7RRBS
  • 6single cell RNA-seq
  • FAIRE-seq
  • 0snATAC-seq
Assay category
  • 121DNA accessibility
Date released
  • 38May, 2022
  • 33February, 2023
  • 20November, 2019
  • 8February, 2021
  • 7October, 2017
  • 5July, 2019
  • 3October, 2019
  • 2August, 2017
  • 2March, 2019
  • 2March, 2020
  • 1January, 2018
Available data
  • 109bed narrowPeak
  • 61bam
  • 40bigWig
  • 27fastq
  • 5bed bed3
  • 3bigBed narrowPeak
  • 1bed broadPeak
  • 1tsv
Organism
  • 121Homo sapiens
Biosample type
  • 121tissue
  • 84primary cell
  • 42in vitro differentiated cells
  • 13cell line
Organ
  • 46pancreas
  • 27eye
  • 21liver
  • 12bone element
  • 12epithelium
  • 12skeleton
  • 8limb
  • 6adipose tissue
  • 6connective tissue
  • 4heart
  • 3blood vessel
  • 3vasculature
  • 2artery
  • musculature of body
  • 1brain
  • 1nerve
  • 1spleen
Project
  • 121AMP
Genome assembly (visualization)
  • 158GRCh38
  • 121hg19
Lab
  • 80AMP-T2D consortium
  • 20Karen Mohlke, UNC
  • 18Kyle Gaulton, UCSD
  • 1Bing Ren, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 1inconsistent ontology term
organ_slims!
  • musculature of body
assay_title!
  • FAIRE-seq
BIOSAMPLE
ASSAY

121 results

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Clear Filters
ATAC-seq
tissue
islet of Langerhans42
liver20
retina15
pigmented layer of retina12
body of pancreas4
adipose tissue3
heart left ventricle2
acetabular part of hip bone1
adipose tissue(adipose white tissue)1
brain1
coronary artery1
distal epiphysis1
distal epiphysis of femur1
distal epiphysis of humerus1
distal epiphysis of tibia1
ilium1
ischium1
omental fat pad1
proximal epiphysis1
proximal epiphysis of femur1
proximal epiphysis of humerus1
proximal epiphysis of tibia1
pubis1
right atrium auricular region1
right lobe of liver1
spleen1
subcutaneous adipose tissue1
thoracic aorta1
tibial artery1
tibial nerve1
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