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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1278ChIP-seq
  • 1275total RNA-seq
  • 260ATAC-seq
  • 153DNase-seq
  • 106single cell RNA-seq
  • 25Hi-C
  • 16RRBS
  • 16small RNA-seq
  • 5FAIRE-seq
  • 4pCHi-C
  • 2Capture-C
  • 0snATAC-seq
Assay category
  • 153DNA accessibility
Date released
  • 131June, 2019
  • 9November, 2018
  • 8October, 2019
  • 4August, 2017
  • 1November, 2020
Available data
  • 153bam
  • 153bed narrowPeak
  • 153bigBed narrowPeak
  • 153bigWig
  • 150bed broadPeak
  • 150bigBed broadPeak
  • 148bed bed3+
  • 12fastq
Organism
  • 153Homo sapiens
Biosample type
  • 129tissue
  • 21primary cell
  • 2cell line
  • 1in vitro differentiated cells
Organ
  • 72kidney
  • 36limb
  • musculature of body
  • 27heart
  • 22brain
  • 18ureter
  • 11epithelium
  • 10vasculature
  • 8blood vessel
  • 8connective tissue
  • 6pancreas
  • 5liver
  • 4artery
  • 4eye
  • 2adipose tissue
  • 2nerve
  • 2vein
  • 1spleen
Project
  • 153AMP
Genome assembly (visualization)
  • 174GRCh38
  • 153hg19
Lab
  • 153AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
organ_slims!
  • musculature of body
BIOSAMPLE
ASSAY

153 results

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Clear Filters
DNase-seq
tissue
heart16
brain14
kidney13
renal cortex interstitium11
renal pelvis10
primary cell
cardiac fibroblast2
endothelial cell of umbilical vein2
skeletal muscle myoblast2
astrocyte of the cerebellum1
astrocyte of the hippocampus1
cell line
Panc11
glomerular visceral epithelial cell1
in vitro differentiated cells
adipocyte1
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