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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
474
total RNA-seq
63
ChIP-seq
23
ATAC-seq
7
DNase-seq
4
pCHi-C
3
WGBS
3
small RNA-seq
2
Capture-C
1
Hi-C
1
RNA microarray
1
RRBS
1
single cell RNA-seq
0
snATAC-seq
Assay category
63
DNA binding
Target of assay
52
histone
52
histone modification
32
broad histone mark
20
narrow histone mark
10
control
1
RNA binding protein
1
transcription factor
Date released
50
August, 2017
12
June, 2019
1
October, 2019
Available data
102
bam
fastq
75
bigWig
58
bed narrowPeak
22
tagAlign
15
bigBed narrowPeak
11
bed bed3+
1
bed broadPeak
Organism
63
Homo sapiens
Biosample type
37
tissue
14
in vitro differentiated cells
12
primary cell
Organ
200
brain
134
heart
100
liver
96
blood vessel
96
vasculature
82
pancreas
66
limb
63
connective tissue
58
kidney
57
epithelium
40
musculature of body
36
adipose tissue
35
nerve
34
artery
17
vein
10
lung
8
blood
8
bodily fluid
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
63
AMP
Genome assembly (visualization)
10
hg19
9
GRCh38
Lab
63
AMP-T2D consortium
Audit category:
11
inconsistent ontology term
files.file_type!
fastq
BIOSAMPLE
ASSAY
63 results
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Clear Filters
ChIP-seq
tissue
subcutaneous abdominal adipose tissue
36
islet of Langerhans
1
in vitro differentiated cells
adipocyte
14
primary cell
mesenchymal stem cell
7
cardiac fibroblast
5
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