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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1831
ChIP-seq
1474
total RNA-seq
528
ATAC-seq
341
single cell RNA-seq
212
DNase-seq
75
WGBS
73
snATAC-seq
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
73
DNA accessibility
Date released
27
February, 2021
21
May, 2022
16
January, 2021
6
August, 2021
2
February, 2023
1
August, 2022
Available data
27
fastq
21
zippedFastqFolder
1
bed bed3+
txt
Organism
73
Homo sapiens
Biosample type
56
primary cell
17
tissue
Organ
11
pancreas
8
blood
8
bodily fluid
6
kidney
Project
48
HPAP
18
T1D
LungMap
7
AMP
Lab
48
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
6
Katalin Susztak, Upenn
1
AMP-T2D consortium
Audit category:
28
audit script error
files.file_type!
txt
award.project!
LungMap
BIOSAMPLE
ASSAY
73 results
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snATAC-seq
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
tissue
islet of Langerhans
7
kidney
6
pancreas
4
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