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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1677
ChIP-seq
1418
total RNA-seq
497
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
87
RNA microarray
75
WGBS
66
snATAC-seq
40
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
snDrop-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
563
DNA accessibility
Date released
100
May, 2020
92
February, 2023
82
August, 2021
81
May, 2022
49
February, 2021
29
May, 2021
26
November, 2019
22
October, 2019
14
September, 2018
11
May, 2023
10
April, 2020
8
October, 2017
7
August, 2020
6
July, 2019
5
August, 2017
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
1
August, 2022
1
November, 2020
Available data
260
bed narrowPeak
157
bam
131
bigWig
70
fastq
64
xls
60
zippedFastqFolder
27
bigBed narrowPeak
14
tsv
12
bed bed3
7
bed bedgraph
5
bed bed3+
4
txt
2
bed broadPeak
Organism
562
Homo sapiens
Biosample type
249
tissue
248
primary cell
37
in vitro differentiated cells
29
cell line
Organ
124
pancreas
103
epithelium
81
kidney
47
heart
46
blood vessel
46
vasculature
45
artery
28
eye
25
connective tissue
23
liver
12
bone element
12
skeleton
10
lung
8
limb
6
adipose tissue
4
brain
2
musculature of body
1
blood
1
bodily fluid
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
456
AMP
97
HPAP
10
LungMap
Genome assembly (visualization)
239
hg19
234
GRCh38
Lab
345
AMP-T2D consortium
97
Klaus Kaestner, Upenn
81
Katalin Susztak, Upenn
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
42
inconsistent ontology term
29
audit script error
1
inconsistent replicate
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
563 results
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Clear Filters
ATAC-seq
snATAC-seq
tissue
kidney
75
6
islet of Langerhans
39
1
coronary artery
36
liver
20
retina
15
+ See 30 more…
primary cell
Langerhans cell
48
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
+ See 35 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
immature adipocyte
2
+ See 7 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
See all biosamples
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