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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1831
ChIP-seq
1507
total RNA-seq
454
ATAC-seq
329
single cell RNA-seq
212
DNase-seq
87
RNA microarray
62
snATAC-seq
57
pCHi-C
34
Hi-C
34
WGBS
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
62
DNA accessibility
Date released
111
February, 2021
May, 2022
16
January, 2021
10
April, 2020
7
August, 2021
2
December, 2019
2
February, 2023
1
August, 2022
Available data
84
txt
27
fastq
2
tsv
Organism
147
Homo sapiens
Biosample type
114
tissue
35
primary cell
Organ
84
bone element
11
pancreas
10
lung
8
blood
8
bodily fluid
8
kidney
1
adipose tissue
1
connective tissue
1
epithelium
Project
94
AMP
27
HPAP
18
T1D
10
LungMap
Lab
88
AMP-T2D consortium
27
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
Audit category:
84
inconsistent ontology term
30
audit script error
month_released!
May, 2022
BIOSAMPLE
ASSAY
149 results
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RNA microarray
snATAC-seq
tissue
bone element
84
lung
10
islet of Langerhans
7
kidney
6
pancreas
4
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primary cell
Langerhans cell
27
peripheral blood mononuclear cell
8
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