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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1831
ChIP-seq
1507
total RNA-seq
454
ATAC-seq
329
single cell RNA-seq
212
DNase-seq
87
RNA microarray
62
snATAC-seq
57
pCHi-C
34
Hi-C
34
WGBS
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
62
DNA accessibility
18
Transcription
Date released
27
February, 2021
May, 2022
18
July, 2019
16
January, 2021
10
April, 2020
6
August, 2021
2
February, 2023
1
August, 2022
Available data
27
fastq
18
bam
18
bigWig
18
tsv
Organism
79
Homo sapiens
Biosample type
43
tissue
37
primary cell
Organ
13
pancreas
10
lung
8
blood
8
bodily fluid
7
kidney
4
brain
3
adipose tissue
3
connective tissue
3
liver
2
musculature of body
1
heart
Project
27
HPAP
25
AMP
18
T1D
10
LungMap
Genome assembly (visualization)
18
GRCh38
18
hg19
Lab
27
Klaus Kaestner, Upenn
19
AMP-T2D consortium
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
Audit category:
28
audit script error
month_released!
May, 2022
BIOSAMPLE
ASSAY
80 results
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snATAC-seq
small RNA-seq
tissue
lung
10
islet of Langerhans
7
kidney
6
pancreas
4
body of pancreas
2
+ See 13 more…
primary cell
Langerhans cell
27
peripheral blood mononuclear cell
8
mesenchymal stem cell of adipose
1
skeletal muscle satellite cell
1
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